On WNYC’s Brian Lehrer Show this morning, MTA Chairman and CEO Tom Prendergast joined his boss Andrew Cuomo in dumping cold water on the Move NY toll reform plan as a way to fund the transit authority’s capital program. Trouble is, his critiques don’t make much sense.

Lehrer played a clip of Cuomo arguing against toll reform on the radio yesterday, then asked Prendergast what he thought of the idea. The MTA chief said he isn’t being dismissive of the plan and that he’s not opposed to it. He then ticked off what, in his view, are a bunch of reasons to dismiss the plan and oppose it.

First, Prendergast said that Move NY “leaves some bridges free.” Exactly what he’s referring to here is a mystery. Maybe Prendergast is concerned that the plan doesn’t put tolls on the Harlem River bridges. He never explains. “I’m not saying this is my position,” he said, “but there some local elected leaders that are concerned [that] some bridges are left free.”

Then, the MTA head said these mysterious free bridges would lead to toll shopping. “I’m not so sure it accurately predicts what driver behavior will be,” he said of Move NY. “I’ve been other places where people drive a long way out of their way to avoid paying a toll.”

Again, it’s not clear what Prendergast is talking about here. The most fundamental component of Move NY is a consistent toll for driving into the central business district, thereby eliminating the incentive to shop for a free bridge and clog up local streets.

Prendergast was also concerned that Move NY would not provide enough revenue to maintain the existing East River bridges — a cost that’s already paid for in the city’s capital budget.

But Prendergast’s objections don’t stop at the bridges. “There’s also some concerns about what will happen with the 60th Street cordon,” he said, without explaining the problem. “I’ll let others speak to the political process.”

Prendergast was also concerned that toll reform wouldn’t start generating revenue soon enough. “To implement this and see your first dollar of revenue, you measure it in years, not months. You see it in three or four years,” he said. “Let’s not count this capital program dependent on that process.”

Even if it took four years to implement — which Move NY says is unlikely — a portion of the toll revenue could back bonds, which would provide cash for the capital plan more quickly than a purely pay-as-you-go program.

These answers are unlikely to sway the Cuomo administration. Apparently, the governor and his MTA are just not interested in reforming the city’s broken toll system to raise revenue for transit.